SNAP - Scalable Nucleotide Alignment Program - Microsoft Research

SNAP is a program that is part of a gene sequencing pipeline. It takes data from gene sequencing hardware that consists of short chunks of DNA (typically 70-300 base pairs long) called reads and determines where, how well and how unambiguously they match to a given reference genome. This is a computationally challenging problem because reference genomes are big (the human genome is over 3 billio

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この前使ってみたが確かに速い。でも出力されたSAMの形式がおかしいとパイプラインの後段でエラーが出て組み込めなかった。何が悪いのか調査中。