Bio::DB::SamNAME Bio::DB::Sam -- Read SAM/BAM database files SYNOPSIS use Bio::DB::Sam; # high level API my $sam = Bio::DB::Sam->new(-bam =>"data/ex1.bam", -fasta=>"data/ex1.fa", ); my @targets = $sam->seq_ids; my @alignments = $sam->get_features_by_location(-seq_id => 'seq2', -start => 500, -end => 800); for my $a (@alignments) { # where does the alignment start in the reference sequence my $seqid = $a->seq_
