'a unifying hypothesis about how messenger RNAs, transcribed pseudogenes, and long noncoding RNAs "talk" to each other using microRNA response elements (MREs) as letters of a new language.'
We studied whole proteome sequences of 970 microbial organisms using n-gram frequencies and cross-perplexity employing the Biological Language Modeling Toolkit and Patternix Revelio toolkit.
"we describe the prerequisites for data commoning and present an established and growing ecosystem of solutions using the shared ‘Investigation-Study-assay’ framework"
"a new database at EBI that stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics."
1
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
N-gram analysis of 970 microbial organisms reveals presence of biological language models - BMC Bioinformatics
Toward interoperable bioscience data - Nature Genetics
The BioSample Database (BioSD) at the European Bioinformatics Institute
