[B! Text Mining] toyasyasのブックマーク

toyasyas id:toyasyas

Text Miningに関するtoyasyasのブックマーク (85)

University of Turku in the BioNLP'11 Shared Task
toyasyas 2013/11/07
Event Extraction

paper

Text Mining
リンク
Cross-species gene normalization by species inference
toyasyas 2013/11/07
paper

Text Mining
リンク
PLAN2L : PLant ANnotation to Literature: a text mining and information extraction system for Arabidopsis thaliana
toyasyas 2013/11/05
"a web tool for integrated text mining and literature-based bioentity relation extraction."

Text Mining

web

tool
リンク
SR4GN: A Species Recognition Software Tool for Gene Normalization
toyasyas 2013/10/30
"an open source tool for species recognition and disambiguation in biomedical text."

paper

Text Mining
リンク
Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization
toyasyas 2013/10/29
"Text mining for the life sciences aims to aid database curation, knowledge summarization and information retrieval through the automated processing of biomedical texts."

paper

Text Mining
リンク
BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events
toyasyas 2013/10/29
"Most current text mining (TM) approaches to extract information about biological events are focused on either limited-scale studies and/or abstracts, with data extracted lacking context and rarely available to support further research."

paper

Text Mining
リンク
FlexiTerm: a flexible term recognition method - Journal of Biomedical Semantics
toyasyas 2013/10/27
paper

NER

Text Mining
リンク
Welcome to ontogene.org
toyasyas 2013/03/13
"a research project based at the Institute of Computational Linguistics (Department of Computer Science) of the University of Zurich."

ontology

Text Mining
リンク
Smart Dictionary Lookup
toyasyas 2012/08/28
"The system will retrieve relevant UniProt IDs from BioThesaurus entries using a soft string matching algorithm."

Text Mining

BioNLP
リンク
From Words to Concepts and Back: Dictionaries for Linking Text, Entities and Ide
Philosophy We strive to create an environment conducive to many different types of research across many different time scales and levels of risk. Learn more about our Philosophy Learn more
toyasyas 2012/05/24
by Valentin Spitkovsky and Peter Norvig

LOD

NLP

Google

Text Mining
リンク
Do we need a text-mining manifesto?
toyasyas 2012/05/23
"We, researchers of the world, expect to be able to *use* the research literature to which we have access. ... Publishers who facilitate these terms now in all subscription agreements (or for everyone, where appropriate): PLoS, BMC, other pure OA publishers, and with some institutions: Elsevier."

Text Mining
リンク
Gold in the text? - Nature
Whether from the petabytes of data produced by the Large Hadron Collider, or the hundreds of millions of bases in the human genome, much scientific analysis nowadays relies on computers to pull out meaning from swathes of data. But one vast store of information, the research literature, has so far seemed immune to computer analysis. By and large, articles exist only in formats designed for humans
toyasyas 2012/04/25
"Publishers point out that they receive few text-mining requests, so the field can't be very hot. So unless text-miners start to make full use of the content that is available, and request more access to published content — ... — the unsatisfactory impasse will continue.

Text Mining

open access

paper
リンク
Why Are There So Few Efforts to Text Mine the Open Access Subset of PubMed Central?
toyasyas 2012/04/25
holding only ~11% of the total published biomedical literature, <2% of all articles in PubMed are in the PMC open-acces subset

Text Mining

open access

pubmed
リンク
COREMINE
toyasyas 2012/04/19
PubGeneの後継システム。"Coremine Medical gives you quick access to comprehensive information on diseases, drugs, treatments and medical biology."

可視化

Text Mining
リンク
CiteSpace: visualizing patterns and trends in scientific literature
Chen, C. et al. (2010) The structure and dynamics of co-citation clusters: A multiple-perspective co-citation analysis. Journal of the American Society for Information Science and Techno logy. (10.1002/asi.21309) Chen, C. (2006) CiteSpace II: Detecting and visualizing emerging trends and transient patterns in scientific literature. Journal of the American Society for Information Science and Technol
toyasyas 2012/04/19
"CiteSpace is a freely available Java application for visualizing and analyzing trends and patterns in scientific literature." うまく可視化できず。

可視化

Text Mining
リンク
VOSviewer - Visualizing scientific landscapes
Centre for Science and Techno logy Studies Centre for Science and Techno logy Studies 2333AL Leiden Zuid Holland 31715273909 Welcome to VOSviewer VOSviewer is a software tool for constructing and visualizing bibliometric networks. These networks may for instance include journals, researchers, or individual publications, and they can be constructed based on citation, bibliographic coupling, co-citati
toyasyas 2012/04/19
ジャーナル間の関係性を可視化するツール

可視化

Text Mining

journal

tool
リンク
Mapping annotations with textual evidence using an scLDA model
toyasyas 2012/04/06
"we present a sentence-based correspondence latent Dirichlet allocation (scLDA) model", "This study uses GO annotation data as a testbed; the approach can be generalized to other annotated data, such as MeSH and MEDLINE documents."

paper

annotation

Text Mining

NLP
リンク
UCSC Genomics Text Indexing
UCSC Genome Bioinformatics Genocoding Project Genomic Text Indexing: Scanning papers for genomic identifiers and mapping them to the human genome. We currently recognize DNA and protein sequences, SNPs, bands and gene symbols. Project details » Open letter to publishers In February 2012 we sent out a letter to various publishers. Letter »
toyasyas 2012/04/05
"We have already indexed 8 million documents from Elsevier and PubmedCentral. They represent roughly 30% of PubMed (all years, ~1940-today)."

Text Mining

Genomics
リンク
Text-Mining the Voice of the People – Communications of the ACM
toyasyas 2012/02/14
"Statistical techniques help public leaders turn text in unstructured citizen feedback into responsive e-democracy."

Text Mining

statistics
リンク
wiki.dbpedia.org : spotlight
DBpedia Spotlight Shedding Light on the Web of Documents DBpedia Spotlight is a tool for annotating mentions of DBpedia resources in text, providing a solution for linking unstructured information sources to the Linked Open Data cloud through DBpedia. Text annotation has the potential of enhancing a wide range of applications including search, faceted browsing and navigation. By connecting text d
toyasyas 2012/02/08
" a tool for automatically annotating mentions of DBpedia resources in text, providing a solution for linking unstructured information sources to the Linked Open Data cloud through DBpedia."

web

API

LinkedData

Text Mining
リンク
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