[B! paper] toyasyasのブックマーク

toyasyas id:toyasyas

paperに関するtoyasyasのブックマーク (45)

Constructing a semantic predication gold standard from the biomedical literature - BMC Bioinformatics
toyasyas 2013/11/22
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annotation

MEDLINE
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University of Turku in the BioNLP'11 Shared Task
toyasyas 2013/11/07
Event Extraction

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Text Mining
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PSB - Abstract
toyasyas 2013/11/07
paper

NER
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Cross-species gene normalization by species inference
toyasyas 2013/11/07
paper

Text Mining
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SR4GN: A Species Recognition Software Tool for Gene Normalization
toyasyas 2013/10/30
"an open source tool for species recognition and disambiguation in biomedical text."

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Text Mining
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Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization
toyasyas 2013/10/29
"Text mining for the life sciences aims to aid database curation, knowledge summarization and information retrieval through the automated processing of biomedical texts."

paper

Text Mining
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BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events
toyasyas 2013/10/29
"Most current text mining (TM) approaches to extract information about biological events are focused on either limited-scale studies and/or abstracts, with data extracted lacking context and rarely available to support further research."

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Text Mining
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The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies - Journal of Biomedical Semantics
Review Open access Published: 11 February 2013 The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web techno logies Toshiaki Katayama1, Mark D Wilkinson1, Gos Micklem1, Shuichi Kawashima1, Atsuko Yamaguchi1, Mitsuteru Nakao1, Yasunori Yamamoto1, Shinobu Okamoto1, Kenta Oouchida1, Hong-Woo Chun1, Jan Aerts1, Hammad Afzal1, Erick Antezana1, Kazuharu Arakawa1, Bruno Aran
toyasyas 2013/10/27
article

paper
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FlexiTerm: a flexible term recognition method - Journal of Biomedical Semantics
toyasyas 2013/10/27
paper

NER

Text Mining
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SEMANTIC WEBS FOR LIFE SCIENCES
toyasyas 2013/08/29
paper

SemanticWeb
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Ontology-Based Querying with Bio2RDF’s Linked Open Data - Journal of Biomedical Semantics
toyasyas 2013/08/29
"Ontology-Based Querying with Bio2RDF’s Linked Open Data'

paper

LOD

SPARQL
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A Study on Pubmed Search Tag Usage Pattern: Association Rule Mining of a Full-day Pubmed Query Log - BMC Medical Informatics and Decision Making
Research article Open access Published: 09 January 2013 A Study on Pubmed Search Tag Usage Pattern: Association Rule Mining of a Full-day Pubmed Query Log Abu Saleh Mohammad Mosa1 & Illhoi Yoo1,2 BMC Medical Informatics and Decision Making volume 13, Article number: 8 (2013) Cite this article BackgroundThe practice of evidence-based medicine requires efficient biomedical literature search such as
toyasyas 2013/08/29
"A Study on Pubmed Search Tag Usage Pattern: Association Rule Mining of a Full-day Pubmed Query Log"

paper

pubmed
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THE TRUE COST OF SCIENCE PUBLISHING
toyasyas 2013/06/10
"Cheap open-access journals raise questions about the value publishers add for their money." BY RICHARD VAN NOORDEN (426 | NATURE | VOL 495 | 28 MARCH 2013)

paper
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Open by default: a proposed copyright license and waiver agreement for open access research and data in peer-reviewed journals - BMC Research Notes
toyasyas 2013/04/21
先日の第6回LinkedData勉強会のオープンライセンスに関連して、科学分野における議論をしている論文があります。Open by default: a proposed copyright license and...

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open access
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A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
toyasyas 2012/11/08
'a unifying hypothesis about how messenger RNAs, transcribed pseudogenes, and long noncoding RNAs "talk" to each other using microRNA response elements (MREs) as letters of a new language.'

paper

bio
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Genome Biology | Home page
toyasyas 2012/11/08
BioCreative, "a general introduction to the main characteristics and applications of currently available text-mining systems for life sciences"

paper

review
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Annotating genes and genomes with DNA sequences extracted from biomedical articles
toyasyas 2012/11/02
"Here, we report the results of a novel text-mining approach that extracts DNA sequences from biomedical articles and automatically maps them to genomic databases.", "Our approach links articles to genes and organisms without relying on gene names or identifiers."

paper

bioinformatics
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Computational solutions to large-scale data management and analysis
toyasyas 2012/09/13
- Success in the life sciences will depend on our ability to properly interpret the large-scale, high-dimensional data sets that are generated by these technologies (real-time imaging, mass spectrometry-based flow cytometry, etc.).

paper
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The making of ENCODE: Lessons for big-data projects
toyasyas 2012/09/12
"researchers must focus on creating the best data set they can. Maybe they will use the data, maybe they won't. What is important is the community resource, not individual success."

paper

BigData
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Databases in peril
toyasyas 2012/08/31
"Life-sciences databases are in crisis, say their operators, as funders keen to support exciting new projects lose interest in maintaining existing services. ",NAR DB Issue 2000にある89のデータベースのうち、44が資金確保に奮闘。18が無問題。7が資金難により終了。

paper

database
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