Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D1–D2, https://doi.org/10.1093/nar/gkl1051
Volume 35 Issue suppl_1 | Nucleic Acids Research | Oxford Academic
Nucleic Acids Research, Volume 35, Issue suppl_1, 1 January 2007, Pages D1–D2, https://doi.org/10.1093/nar/gkl1051
XQTav: an XQuery processor for Taverna environment
Abstract Taverna workbench is an environment for construction, visualization and execution of bioinformatic workflows that integrate specialized tools available through the internet. It is gaining popularity fast, because of supporting the most important bioinformatic services and its simple, yet robust graphical notation. Here we present XQTav—an extension of Taverna that provides full integratio
M-Coffee: combining multiple sequence alignment methods with T-Coffee
INTRODUCTION The multiple alignment of DNA or protein sequences is one of the most commonly used techniques in sequence analysis. Multiple alignments constitute a necessary pre-requisite in phylogeny, remote homologue detection and structure prediction. Until recently the choice for building multiple sequence alignments (MSAs) was limited to a handful of packages but a recent increase in genomic d
Nucl. Acids Res 2006 [Database Issue]
Nucleic Acids Research, Volume 34, Issue suppl_1, 1 January 2006, Page D1, https://doi.org/10.1093/nar/gkj150
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Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
Abstract Motivation: High-throughput technologies such as DNA sequencing and microarrays have created the need for automated annotation of large sets of genes, including whole genomes, and automated identification of pathways. Ontologies, such as the popular Gene Ontology (GO), provide a common controlled vocabulary for these types of automated analysis. Yet, while GO offers tremendous value, it a
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ADAM: another database of abbreviations in MEDLINE
https://academic.oup.com/nar/redirect-unavailable?url=nar.oxfordjournals.org/cgi/content/abstract/gkl507
https://academic.oup.com/nar
https://academic.oup.com/bioinformatics/article-abstract/22/8/1013/227485
https://academic.oup.com/bioinformatics/article-abstract/15/6/510/177731
Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing
Genomic analysis of insertion behavior and target specificity of mini-Tn7 and Tn3 transposons in Saccharomyces cerevisiae
A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome
General Instructions
General Instructions
https://academic.oup.com/nar/redirect-unavailable?url=nar.oxfordjournals.org/content/vol33/issue8/aindex.dtl
GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
Alternative splicing regulation at tandem 3′ splice sites
Volume 33 Issue suppl_2 | Nucleic Acids Research | Oxford Academic