EMBL-EBI TrainingWe train scientists at all levels to get the most out of publicly available biological data.
exonerate sequencing alignment
About exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. If you have questions, you can email guy@ebi.ac.uk Documentation See the beginner's, advanced, and NEW:server user guides. For further details about using exonerate and examples, see man pages fo
Velvet: a sequence assembler for very short reads
Velvet Sequence assembler for very short reads Current version: 1.2.10 Manual and extension for Columbus in pdf format Public Git URL: git clone git://github.com/dzerbino/velvet.git For up-to-date info, you can consult and/or subscribe to the mailing list. For transcriptomic assembly Velvet is extended by Oases. News 29/03/2011: Velvet 1.1 Velvet is now multithreaded, thanks to the use of the OMP
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Oases: a transcriptome assembler for very short reads
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