[B! ChIP-Seq] yag_aysのブックマーク

ChIP-Seq Transcription Factor Data | Genome Sciences Centre

yag_ays 2011/01/17

ChIP-Seq

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ChIP-Seq Tool Set

ChIP-Seq Tool SetSoftware Designed to Analyze and Compare ChIP-Seq Data News: The tool has been updated to a new version! Please check the help for aid in running the program. More details will come when the paper is published! A collaboration between Farnham (website here) Korf (website here) and Ludaescher (website here) laboratories. Analysis programs by Kim Blahnik. Website by Lei Dou , Sean

yag_ays 2011/01/07

"This software is designed to analyze and compare ChIP-Seq data."

ChIP-Seq

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GADEM

A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery Previously, we reported GADEM, an efficient de novo motif discovery tool for large-scale genomic sequence data. We present an updated version, v1.3.1, that has improvements and additions. We added a 'seeded' analysis in which a user-specified position weight matrix (PWM) is the starting PWM model.

yag_ays 2011/01/06

"A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery"

ChIP-Seq

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Babraham Bioinformatics - SeqMonk Mapped Sequence Analysis Tool

Stable. This code is being widely used for real work, although SeqMonk is still under active development. SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are: Import of mapped da