Installing Perl, DBD::mysql and Ensembl on OSX
Over the past few months a number of users have asked us how to install Ensembl and its dependencies on OSX. Over the past 4 years I have had to do this quite a number of times and thought it best to share my personal best practice. There are alternatives to this methodology involving supplementing the stock OSX Perl with extra libraries or using ActiveState for OSX. I recommend neither method. Ap
A Ruby API to query the Ensembl database for genomic features
1 INTRODUCTION The Ensembl (Flicek et al., 2010) and UCSC (Fujita et al., 2010) genome browsers are the first point of call for a large community of genetics and genomics researchers. Both provide a graphical interface for browsing the genomes of a large number of species, displaying the location of genes, polymorphisms, repeats and regulatory regions. Each database can also be accessed directly v
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BioMed Central | Thematic series
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
Help - Search - Homo_sapiens - Ensembl genome browser 109
FTP Directory Structure
http://g2.bx.psu.edu:9000/
Help - Search - Homo_sapiens - Ensembl genome browser 111
