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NGS現場の会・オープンバイオ研究会・生命情報科学若手の会・定量生物学の会 4会合同シンポジウム 「これからの生命科学を考える」 10/16(火)・17(水)@タワーホール船堀(東京)401会議室 若手主導の4会(NGS現場の会、オープンバイオ研究会、生命情報科学若手の会、定量生物学の会;五十音順)による 「生命科学の10年後」をテーマにした合同シンポジウムを以下のとおり、開催します。生命医薬情報学連合大会と同会場です。 連合大会は参加費がかかりますが、本シンポジウムは参加費無料・事前登録不要となります。それぞれの分野の盛り上りを感じられ、帰って研究したくてしかたがなくなるようなシンポジウムを目指しています。 連合大会参加者の方も、そうでない方も、皆様のご参加をお待ちしています。 また、連合大会でのポスター発表(8/24締切)もご検討ください。会場へのアクセス: http://www.to
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NGS現場の会とは? NGS現場の会は、21世紀に登場し生命科学分野に革命を起こした新しいシーケンステクノロジー(いわゆるNGSテクノロジー)をテーマとした、新しい研究コミュニティです。 NGS現場の会では、立場や分野を超え―—すなわち学生も教授も、研究者も技術者も営業職も、大学・研究所からも産業界からも、そして医学・農学・薬学・工学から基礎科学まで―—オープンでフラットな交流を行います。その核となるのが、私たちのかかげる“現場”というコンセプトです。現場とはすなわち、多様な生命現象に魅せられ、目の前にある疾患や技術的問題を克服することを目指し、あるいは解析や実験のための手法や製品に誇りとこだわりを持つ、みなさんのことに他なりません。 急速に進むNGS分野の技術革新を受けて、NGS現場の会は研究会に700名の参加者を集める、世界的に見てもユニークなコミュニティに成長しています。NGSに興味
About MyGene.Info MyGene.Info provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. A typical use case is to use it to power a web application which requires querying genes and obtaining common gene annotations. For example, MyGene.Info services are used to power BioGPS. MyGene.Info web services MyGene.Info provid
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery Kai Wang; Darshan Singh; Zheng Zeng; Stephen J. Coleman; Yan Huang; Gleb L. Savich; Xiaping He; Piotr Mieczkowski; Sara A. Grimm; Charles M. Perou; James N. MacLeod; Derek Y. Chiang; Jan F. Prins; Jinze Liu Nucleic Acids Research 2010; doi: 10.1093/nar/gkq622 Recent News 2011.9.15 MapSplice is reviewed in Gregory Grant, et
Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq Ali Mortazavi, Brian Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold This is the page of the underlying data and code for the analysis of the paper above, which has been published in Nature Methods in 2008. While the paper focuses on mouse tissues, we have since used the same code in C elegans and human cell lines with great succe
About exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. If you have questions, you can email guy@ebi.ac.uk Documentation See the beginner's, advanced, and NEW:server user guides. For further details about using exonerate and examples, see man pages fo
Method Open Access Published: 21 October 2010 FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data Andrea Sboner1,2, Lukas Habegger1, Dorothee Pflueger3, Stephane Terry3, David Z Chen1, Joel S Rozowsky2, Ashutosh K Tewari4, Naoki Kitabayashi3, Benjamin J Moss3, Mark S Chee5, Francesca Demichelis3,6, Mark A Rubin3 & …Mark B Gerstein1,2,7 Show authors G
We are sorry, but the site you are looking for no longer exists Wikispaces was founded in 2005 and has since been used by educators, companies and individuals across the globe. Unfortunately, the time has come where we have had to make the difficult business decision to end the Wikispaces service. We first announced the site closure in January 2018, through a site-wide banner that appeared to all
A Simple Example Here is a simple example of a three alignment blocks derived from five starting sequences. The first track line is necessary for custom tracks, but should be removed otherwise. Repeats are shown as lowercase, and each block may have a subset of the input sequences. All sequence columns and rows must contain at least one nucleotide (no columns or rows that contain only insertions).
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