iRAP: RNA-seq analysis tool A flexible pipeline for RNA-seq analysis that integrates many existing tools for filtering and mapping reads, quantifying expression and testing for differential expression. iRAP is used to process all RNA-seq data in Expression Atlas. Expression Atlas R Package on Bioconductor Search and download pre-packaged data from Expression Atlas inside an R session. Raw counts a
The functional genomics data collection (ArrayExpress), stores data from high-throughput functional genomics experiments, and provides data for reuse to the research community. In line with community guidelines, a study typically contains metadata such as detailed sample annotations, protocols, processed data and raw data. Raw sequence reads from high-throughput sequencing studies are brokered to
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