28 Dec 2009: This thread has been closed. Please see our wiki software portal for information about each of these packages. A reasonably thorough table of next-gen-seq software available in the commercial and public domain Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that