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PRISM offers a comprehensive genomic approach to transcription factor function prediction
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
Digital gene expression for non-model organisms
Extensive variation and low heritability of DNA methylation identified in a twin study
Large-scale methylation domains mark a functional subset of neuronally expressed genes
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
https://genome.cshlp.org/content/early/2009/07/06/gr.095190.109.short?rss=1
Next-generation tag sequencing for cancer gene expression profiling
Circos: An information aesthetic for comparative genomics
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
A systems biology approach for pathway level analysis
High-throughput biochemical analysis of in vivo location data reveals novel distinct classes of POU5F1(Oct4)/DNA complexes
Gene-specific vulnerability to imprinting variability in human embryonic stem cell lines
Initial sequence and comparative analysis of the cat genome
Synthetic biology projects in vitro
Human embryonic stem cells have a unique epigenetic signature
An initial map of insertion and deletion (INDEL) variation in the human genome
The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment
Human embryonic stem cells have a unique epigenetic signature