Open Babel
Open Babel: The Open Source Chemistry Toolbox Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. Ready-to-use programs, and complete programmer's toolkit Read, write and convert
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Nature Precedings
A quantitative high-throughput screen identifies potential epigenetic modulators of gene expression - ScienceDirect
http://almost.cubic.uni-koeln.de/cdk/cdk_top
