RAST Server - RAST Annotation Server
Warning: You are using an unsupported browser. Some of the features of this application may not be available. We are currently developing for Firefox 2.x, Safari 2.x, MS InternetExplorer 6.x, Chrome 0.2, and higher versions. Info: RAST Access Problems Click here for instructions on how to resolve several of the most common problems accessing RAST or your RAST data. Comand-Line API "301 Permanently
bcl2fastq Conversion Software
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libcds | Compact Data Structures Library
Welcome to the libcds Web page! libcds implements low-level succinct data structures such as bitmaps, sequences, permutations, etc. The main goal is to provide a set of structures that form the building block of most compressed/succinct solutions. In the near future we are planning to add compression algorithms and support for succinct trees. The documentation is slowly progressing, if you have an
MyGenome for iPad on the iTunes App Store
Description MyGenome empowers you to explore a real human genome, find out about possible health implications, and view reports about important genetic variations. The MyGenome app provides a simple, intuitive and educational interface for genome exploration and learning. The MyGenome app features: •Actual genome of Illumina CEO, Jay Flatley (donated for educational purposes) •Genome Map, Health C
Apache POI - the Java API for Microsoft Documents
25 November 2023 - POI 5.2.5 available The Apache POI team is pleased to announce the release of 5.2.5. Several dependencies were updated to their latest versions to pick up security fixes and other improvements. A summary of changes is available in the Release Notes. A full list of changes is available in the change log. People interested should also follow the dev list to track progress. See the
TIMSAC for R package
1. はじめに TIMSAC(TIMe Series Analysis and Control program)は，統計数理研究所で開発された時系列データの解析，予測，制御のための 総合的プログラムパッケージである．オリジナルTIMSAC(TIMSAC-72)は1972年に発表され，その後，TIMSACシリーズとしてTIMSAC-74，TIMSAC-78，TIMSAC-84が Computer Science Monograph に発表された．工業プロセスの最適制御，経済変動の分析等広い分野で実際に利用されている．TIMSACの特徴としては，情報量規準の考え方を用いた時系列解析プログラムであることが挙げられる．TIMSAC-72ではFPE (Final Prediction Error)，TIMSAC-74以降ではAIC (Akaike Information Criterion)，TIM
LaTeX Poster Template
Praise “I was in the usual horrible hurry, facing the most important conference in my life with only two days to go, but your template allowed me to come up with the (rather nice) poster I enclose in one day -- from googling to the final .pdf -- even leaving some time for packing my bags :^). “baposter [...] makes beautiful posters, much better and [more] easily than what you can do with powerpoin
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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Recent advances in high-throughput cDNA sequencing (RNA-seq) can reveal new genes and splice variants and quantify expression genome-wide in a single assay. The volume and complexity of data from RNA-seq experiments necessitate scalable, fast and mathematically principled analysis software. TopHat and Cufflinks are free, open-source software tools for gene discovery and comprehensive expression an
Sidow Lab -
Quantitative Enrichment of Sequence Tags: QuEST QuEST is a Kernel Density Estimator-based package for analysis of massively parallel sequencing data from ChIP-seq experiments. Click here for Anton's QuEST site QuEST Downloads Software Package QuEST 2.4 (gzipped tar that includes readme, Oct 5 2009) QuEST test data (BIG FILES) GABP ChIP Data (gzipped text, 120.2 Mb, Mar 11 2008) Control (input) Dat
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Scrivener | Literature & Latte
BatMis: a fast algorithm for k-mismatch mapping
https://www.liebertpub.com/doi/abs/10.1089/cmb.2012.0023
http://www.cs.ucr.edu/~stelo/papers/ISMB12.pdf
googlecl - Project Hosting on Google Code
SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer
Data Visualization for Web Designers
English (US)
CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures
ChIP-Seq