Uncovering hypergraphs of cell-cell interaction from single cell RNA-sequencing data
AbstractComplex biological systems can be described as a multitude of cell-cell interactions (CCIs). Recent single-cell RNA-sequencing technologies have enabled the detection of CCIs and related ligand-receptor (L-R) gene expression simultaneously. However, previous data analysis methods have focused on only one-to-one CCIs between two cell types. To also detect many-to-many CCIs, we propose scTen
Bioconda: A sustainable and comprehensive software distribution for the life sciences
New Results Bioconda: A sustainable and comprehensive software distribution for the life sciences Ryan Dale, Björn Grüning, Andreas Sjödin, Jillian Rowe, Brad A. Chapman, Christopher H. Tomkins-Tinch, Renan Valieris, Bérénice Batut, Adam Caprez, Thomas Cokelaer, Dilmurat Yusuf, Kyle A. Beauchamp, Karel Brinda, Thomas Wollmann, Gildas Le Corguillé, Devon Ryan, Anthony Bretaudeau, Youri Hoogstrate,
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