DESeq vs edgeR Comparison

Update (Dec 18, 2012): Please see this related post I wrote about differential isoform expression analysis with Cuffdiff 2. DESeq and edgeR are two methods and R packages for analyzing quantitative readouts (in the form of counts) from high-throughput experiments such as RNA-seq or ChIP-seq. After alignment, reads are assigned to a feature, where each feature represents a target transcript, in the

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bioinformatics, RNA-seq, NGS, R