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Group description The research group studies a new subfield of data compression - data structure compression. The new aspect compared to traditional compression is that the compressed data (structure) needs to be represented so that access to its internal parts is provided without uncompressing the whole structure. As an example, consider a binary tree of n nodes. It is possible to represent the t
New: Front Mol BioSci: Towards Interpretable CryoEM: Disentangling Latent Spaces of Molecular Conformations ICML2024: Causal Representation Learning Made Identifiable by Grouping of Observational Variables AISTATS2024: Identifiable Feature Learning for Spatial Data with Nonlinear ICA NeurIPS2023: Provable benefits of annealing for estimating normalizing constants NeuroImage: Unsupervised represent
582655: Formal Type Theory (4 cr), autumn 2009 News 2010-05-18 The Spring 2010 Coq project assignment and its sample solution are now available. 2010-04-08 The questions and sample solutions to the March 26th separate exam are now available. 2010-01-10 The results are in. See the final version of the checklist for details of the exercise points. Those who failed, or wish to raise their grade, can
This web page will no longer be updated. See the author's web pages for further releases. RLCSA [4, 3, 7] is a compressed suffix array implementation that has been optimized for highly repetitive text collections. Examples of such collections include version control data and individual genomes. This implementation also serves as a testbed for many techniques used with compressed suffix arrays. The
SuDS project / Compressed suffix tree implementation News Our C++-implementation of compressed suffix tree is available for download (version 1.1). Note: If you have access to a 64-bit server machine with 32 GB memory, you can construct the compressed suffix tree of the complete Human Genome. The final memory requirement for HG is 8.8 GB, but during construction the memory peak is at 24 GB. This v
The basic Bresenham algorithm Consider drawing a line on a raster grid where we restrict the allowable slopes of the line to the range . If we further restrict the line-drawing routine so that it always increments x as it plots, it becomes clear that, having plotted a point at (x,y), the routine has a severely limited range of options as to where it may put the next point on the line: It may plot
Sgrep home page What is sgrep ? sgrep (structured grep) is a tool for searching and indexing text, SGML,XML and HTML files and filtering text streams using structural criteria. The data model of sgrep is based on regions, which are nonempty substrings of text. Regions are typically occurrences of constant strings, SGML-tags, or meaningful text elements, which are recognizable through some delimiti
PArrows is an arrows based parsing combinator library written in Haskell. The library is similar to Parsec, but arrows allow for more future optimizations. Currently PArrows is only tested with GHC, although making it work with Hugs should be easy. Documentation Haddock reference. Download Source release PArrows-0.1.tar.gz (4.9kb) darcs get http://www.cs.helsinki.fi/u/ekarttun/PArrows/PArrows Br
Linus Torvalds (torvalds@transmeta.com) The homepage of a WWW-illiterate Why does this exist at all? Frankly, I don't know. I got a default homepage (in Finnish) made automatically for me, and now I wonder what I should do with it. If you have any great suggestions, feel free to mail me, and I'll probably feel free to ignore you. If you're looking for Linux information, you'll find more of it some
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